
Boutique hotel holiday rentals in Shinjuku
Find and book unique boutique hotel rentals on Airbnb
Top-Rated Boutique Hotels in Shinjuku
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.
Holiday rentals for every style
Get the amount of space that is right for you
Popular amenities for Shinjuku Boutique Hotels
Family-Friendly Boutique Hotels

2nd Floor Artistic Twin Room Inspired by Noh Dream

Modern queen suite with private bathroom - rooftop

Shinjuku 10mins! Relaxing room max 4ppl!

Hotel like 1 big house/Standard Twin②/3 people

Newly opened hotel-style t suite Subway 3 minutes

MANGADesign・2 mattress・Free simple breakfast& wifi

Studio apt 6p|Shibuya Sta 8min walk|Wifi|Kitchen

Ground Floor Zen Room with – Artistic Tokyo Stay
Boutique Hotels with a patio

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

Shibuya direct access to Skytree station 5 min walk 3 suites 3 bathrooms Washing machine Elevator Airport direct access

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

4 bedrooms, 4 bathrooms, 3 washing machines, 4 kitchens, direct access to the airport, elevator building, 5 minutes walk to Skytree station
Other boutique hotel holiday rentals

Superior Room | Shinjuku20m|Kagurazaka

New Open!2BR 1 + Bar Kitchen!Family Room for 4-5!Asakusa Temple view!Direct access to Haneda & Narita Airport!

Room 202, 3 mins walk from Asakusabashi Station, Asakusa, Akihabara, Ueno neighborhood, kitchenware, kitchen, washing machine, direct access to Haneda and Narita Airport

Executive Room 56㎡|2Q+2SofaBed|20 min Shinjuku

Unique modern Japanese room, 4 subway sta. 5min!

Spacious 3F Loft with Kitchen & Uniqueness Living

The Barn Tokyo - < Double room >

New-build/family owned/large rooms/wifi/Queenbed
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
30 properties
Nightly prices starting at
$77 AUD before taxes and fees
Total number of reviews
1.8K reviews
Wi-Fi availability
30 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Local attractions
Shinjuku Station, Shin-Okubo Station and Lumine the Yoshimoto
Destinations to explore
- Serviced apartment rentals Shinjuku
- Rentals with a home theatre Shinjuku
- Apartment rentals Shinjuku
- Rentals with a hot tub Shinjuku
- Condo rentals Shinjuku
- Rentals with a patio Shinjuku
- Villa rentals Shinjuku
- Fitness-friendly rentals Shinjuku
- Aparthotel rentals Shinjuku
- Family-friendly rentals Shinjuku
- Rentals with a fireplace Shinjuku
- Hotel rentals Shinjuku
- Rentals with a washing machine and dryer Shinjuku
- House rentals Shinjuku
- Pet-friendly rentals Shinjuku
- Rentals with outdoor seating Shinjuku
- Smoking-friendly rentals Shinjuku
- Boutique hotel rentals Shinjuku
- Boutique hotel rentals Tokyo Prefecture
- Boutique hotel rentals Japan
- Asakusa Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Kinshicho Sta.
- Shibuya Station
- Ikebukuro Station
- Tokyo Disney Resort
- Nippori Sta.
- Tokyo Disneyland
- Tokyo Tower
- Tokyo Sta.
- Kamakura Yuigahama Beach
- Haneda Airport Terminal 1 Sta.
- Yoyogi Park
- Shimo-Kitazawa Sta.
- Tawaramachi Station
- Koenji Station
- Tokyo Dome
- Kamata Sta.
- Otsuka Station
- Shinagawa Station
- Shimbashi Station
- Oshiage Sta.
- Things to do Shinjuku
- Things to do Shinjuku
- Sports activities Shinjuku
- Food and drink Shinjuku
- Tours Shinjuku
- Nature and outdoors Shinjuku
- Entertainment Shinjuku
- Sightseeing Shinjuku
- Art and culture Shinjuku
- Things to do Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Wellness Tokyo Prefecture
- Tours Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Things to do Japan
- Food and drink Japan
- Sports activities Japan
- Entertainment Japan
- Tours Japan
- Nature and outdoors Japan
- Sightseeing Japan
- Wellness Japan
- Art and culture Japan