
Boutique hotel holiday rentals in Shinjuku
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Top-Rated Boutique Hotels in Shinjuku
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.
Holiday rentals for every style
Get the amount of space that is right for you
Popular amenities for Shinjuku Boutique Hotels
Family-Friendly Boutique Hotels

2nd Floor Artistic Twin Room Inspired by Noh Dream

Modern queen suite with private bathroom - rooftop

Shinjuku 10mins! Relaxing room max 4ppl!

New-build/family owned/large rooms/wifi/Queenbed

① Newly built in 2020, queen bed, Otsuka · Ikebukuro, smart TV [Sunshine City 3 minutes on foot]

Newly opened hotel-style t suite Subway 3 minutes

Newly opened hotel-style t suite Subway 3 minutes

MANGADesign・2 mattress・Free simple breakfast& wifi
Boutique Hotels with a patio

Shibuya direct access to Skytree station 5 min walk 3 suites 3 bathrooms Washing machine Elevator Airport direct access

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

Direct access to the airport, 5 minutes walk to Skytree Station, 2 suites, 2 bathrooms, kitchen, washing machine, elevator, Amin Hotel

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

4 bedrooms, 4 bathrooms, 3 washing machines, 4 kitchens, direct access to the airport, elevator building, 5 minutes walk to Skytree station
Other boutique hotel holiday rentals

Superior Room | Shinjuku20m|Kagurazaka

A perfect condominium for business or leisure

New Open!2BR 1 + Bar Kitchen!Family Room for 4-5!Asakusa Temple view!Direct access to Haneda & Narita Airport!

Skytree Station 5 min walk, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

【IKOI_203】Well-Equipped Hidden Gem: Hibiya Line

Executive Room 56㎡|2Q+2SofaBed|20 min Shinjuku

Spacious 3F Loft with Kitchen & Uniqueness Living

4 single beds in Tokyo/2 train stations : Studio A
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
50 properties
Nightly prices starting at
$77 AUD before taxes and fees
Total number of reviews
4.9K reviews
Rentals with dedicated workspaces
10 properties have a dedicated workspace
Wi-Fi availability
50 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Destinations to explore
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- Rentals with a patio Shinjuku
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- Rentals with breakfast Shinjuku
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- Boutique hotel rentals Tokyo Prefecture
- Boutique hotel rentals Japan
- Asakusa Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Kinshicho Sta.
- Shibuya Station
- Ikebukuro Station
- Tokyo Disney Resort
- Nippori Sta.
- Tokyo Disneyland
- Tokyo Tower
- Tokyo Sta.
- Kamakura Yuigahama Beach
- Haneda Airport Terminal 1 Sta.
- Yoyogi Park
- Shimo-Kitazawa Sta.
- Tawaramachi Station
- Koenji Station
- Tokyo Dome
- Kamata Sta.
- Otsuka Station
- Shinagawa Station
- Shimbashi Station
- Oshiage Sta.
- Things to do Shinjuku
- Sports activities Shinjuku
- Food and drink Shinjuku
- Tours Shinjuku
- Nature and outdoors Shinjuku
- Entertainment Shinjuku
- Sightseeing Shinjuku
- Art and culture Shinjuku
- Things to do Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Wellness Tokyo Prefecture
- Tours Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Things to do Japan
- Food and drink Japan
- Sports activities Japan
- Entertainment Japan
- Tours Japan
- Nature and outdoors Japan
- Sightseeing Japan
- Wellness Japan
- Art and culture Japan