Hotels in San Juan Islands

Find and book unique hotels on Airbnb

Top-rated hotels in San Juan Islands

Guests agree: these hotels are highly rated for location, cleanliness and more.

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Guest favourite
Hotel room in Sequim
4.99 out of 5 average rating, 103 reviews

Dungeness Valley Inn -Olympic Discovery Trail Rm

Dungeness Valley Inn a four room Inn/Motel, with unique themes; Lavender, Olympic Discovery Trail, Lighthouse, and Lake Crescent Rooms found as separate listings on Airbnb. Close to the mountains, ¼ mile to Discovery Trail & next to the OLD MILL CAFE, and just 5 mile to Sequim and a short bicycle ride to the beach & Port Angeles. Hiking, biking, or golfing are here. Old Mill Café is next door with outstanding meal and drinks. The on the front of the INN is a Large MAP to access the entire NOP.

ValueLocationBackyard

Superhost
The entrance features a welcoming porch with two Adirondack chairs positioned beside a small purple table. A landscaped yard is visible, bordered by bushes and trees. The front door opens to a spacious interior, inviting exploration of the property.
Hotel room in Sequim
4.8 out of 5 average rating, 5 reviews

King Spa Bunk Room

This King room has views of our beautiful property & some views of the bay! King bed and euro-lounger that makes into a double. Separate area with bunk beds (2 single beds). Access to our private beach! Two person whirlpool tub under a skylight; fine Microfiber bathrobes, Electric, river rock fireplace, desk. No kitchen but a small refrigerator, microwave, coffee maker – coffee and tea are provided. Other amenities include hairdryer, fine microfiber bathrobes, cable TV, VHS,DVD.

LocationFamilyBathroom

Superhost
Hotel room in Eastsound

Studio apartment, Orcas Island, Madrona Suites #2

Enjoy a stylish experience Brand new suites situated in the heart of Eastsound on Orcas Island. Enjoy the best of both worlds, with central walking access to shops, dining and nature. This Studio Suite is the ideal accommodations for two guests, destination diners, couples. Fresh, clean, convenient, modern, luxury fixtures, comfortable, and suited to your needs. Built and operated by longtime islanders, and the preferred accommodations of Matia Kitchen, you're in good hands!

LocationDecorHospitality

Superhost
Hotel room in Lynnwood
4.77 out of 5 average rating, 31 reviews

Steps to Alderwood Mall + Free Breakfast & Kitchen

Stay minutes from Alderwood Mall, Boeing Everett, and downtown Seattle in this spacious all-suite property designed for comfort and convenience. Enjoy a free hot breakfast each morning, take a dip in the seasonal outdoor pool, or hit the fitness center for a quick workout. Every suite includes a full kitchen and free Wi-Fi—perfect for families, business travelers, or weekend explorers. Pet-friendly and close to I-5, it’s your easy gateway to the best of the Pacific Northwest.

ValueLocationNearby

Superhost
Hotel room in Lynnwood
New place to stay

Near Paine Field Airport | Pool + Free Breakfast

Located in Lynnwood, just north of Seattle, this all-suite property offers easy access to Alderwood Mall, Downtown Seattle, Paine Field, and major Pacific Northwest attractions. Guests enjoy spacious suites with full kitchens, complimentary hot breakfast, free Wi-Fi, an indoor pool, fitness center, and a weekly evening social. Whether you're visiting for business, shopping, or sightseeing, this convenient location makes exploring the Seattle area simple and enjoyable.

Hotel room in Eastsound
4.65 out of 5 average rating, 17 reviews

Waterfront Suite with Full Kitchen & Scenic Views

Enjoy comfort and flexibility at Rosario Village in the Harborside Hearth Suite, with a king bed and double Murphy bed. Featuring a full kitchen and peaceful water views, it’s the perfect cozy retreat by the water. ✔ Just 5 minutes from Moran State Park 🌲 ✔ Full kitchen for cooking and dining 🍳 ✔ Private balcony or patio with seating 🪴 ✔ Roku-enabled Smart TV 📺 ✔ Contactless Smart Lock for easy check-in 🔑 ✔ Complimentary parking 🚗 with EV charging available ⚡

LocationValueHospitality

Hotel room in Bothell
4.55 out of 5 average rating, 42 reviews

Near Woodinville Wine Country + Breakfast & Pool

Stay near UW Bothell and Woodinville Wine Country in this modern all-suite stay designed for comfort and convenience. Enjoy a free hot breakfast each morning, take a dip in the seasonal outdoor pool, or grill out in the courtyard patio. Each suite features a full kitchen and free Wi-Fi—perfect for work trips, family visits, or wine weekends. With pet-friendly rooms and easy access to I-405, you’ll have the best of the Pacific Northwest right at your doorstep.

ValueLocationIndoor spaces

Superhost
A two-story building is prominently featured, showcasing the 'Hotel Planter' sign above the entrance. Striped awnings adorn the large windows, and several parked cars are visible in front. Warm lighting emanates from the windows, creating an inviting presence in the evening twilight.
Hotel room in La Conner
4.8 out of 5 average rating, 5 reviews

Channel View Historic Suite (Queen) - #5

Nestled in the heart of La Conner, we boast a prime location, providing easy access to the town's renowned restaurants and eclectic gift shops. The allure of our establishment is enhanced by a beautiful courtyard, a serene oasis centrally located on our property, offering a tranquil escape for our guests. Experience a bygone era while visiting our boutique 12-room hotel. Your journey into the heart of La Conner begins here, at Hotel Planter!

LocationAir conditioningCleanliness

Superhost
Hotel room in Anacortes

Lake Campbell Lodging unit 1

Lake Campbell Lodging: Unit 1 offers a charming and convenient base for your Fidalgo Island adventures. This quaint, family-owned motel is perfectly situated on Highway 20, directly across from the scenic Lake Campbell and centered between the dramatic views of Deception Pass and the historic charm of downtown Anacortes. This unit has a full kitchen and plenty of room to stretch out.

Hospitality

Guest favourite
A room features a queen bed with a burgundy bedspread. A large flat-screen TV is mounted on the wall opposite the bed. A small dining area with a table and chairs is visible in the background, alongside a doorway leading to the bathroom.
Hotel room in Port Angeles
4.73 out of 5 average rating, 613 reviews

Queen Suite w Two Queen Beds w Kitchen

Hi, Welcome to Angeles motel, We are not pet friendly and No smoking motel, We have Free WIFI, cable TV, guests laundry room and parking, Very close to National Park and ferry and 6 blocks away to downtown. We do not welcome the guests with bad reviews, We do not welcome the guests with no reviews, the Guests with bad reviews or with no reviews please try somewhere else, Thanks!

FamilyLocationView

The exterior of the boutique hotel features a modern design with a mix of white and dark blue elements. A spacious parking lot is visible in front, along with a welcoming lobby entrance. The five-story building showcases a series of large windows.
Hotel room in Victoria
4.79 out of 5 average rating, 146 reviews

Chic Boutique Hotel Room B

Enjoy a beautiful getaway when you choose The Vic. The Garden City is yours to explore when you visit our boutique hotel in Victoria, BC. With a central location in the heart of a scenic, historic community, we offer easy access to Victoria’s Inner Harbour, Victoria International Airport (YYJ), and Mayfair Shopping Centre, featuring over 120 upscale shops.

ValueLocationCleanliness

College Inn Hotel
4.73 out of 5 average rating, 500 reviews

College Inn Hotel

Premium double queen offers a private retreat with two queen beds, desk, sitting benches, and a private bath. Enjoy wifi, cable TV, ceiling fan, hairdryer, and access to a shared kitchen and loft. Complimentary tea and coffee are provided. Cribs available upon request.

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