
Boutique hotels in San Diego County
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in San Diego County
Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

Standard King @ The Green Room Hotel
As featured in Travel+Leisure, Condé Nast & LATimes, The Green Room Hotel is a thoughtfully designed boutique stay in hip & vibrant South O just blocks from the beach, top restaurants, & Carlsbad Village. Unlike typical rentals, there’s an inviting warmth here, from its tranquil & well-appointed shared patio to hosts regularly on site offering personal recommendations. Secure parking, cedar hot tub, surf & beach gear included. Bar, restaurant, & grocer next door. And no service or cleaning fees!

Heart of San Diego King Suite TV - Neon Elm Hotel
The Neon Elm Hotel professionally managed by NOVIQ. Escape to our San Diego studio, ideally situated for exploring the city. This inviting space features a king bed, private bathroom, and kitchenette. Enjoy amenities like a coffee maker and smart TV. Located near Balboa Park and the Gaslamp Quarter, you'll have easy access to San Diego's top attractions, including Petco Park and the San Diego Zoo. Enjoy a comfortable and convenient stay in a prime location, perfect for your San Diego adventure.

Winter Room @ Eaglenest Inn w/ Pool & Seasonal SPA
Eaglenest Inn is a charming retreat offering three cozy guest rooms and a spacious two-bedroom suite, each equipped with a smart TV and a private bathroom for ultimate comfort. Guests can enjoy breathtaking views of the surrounding mountains or the serene garden. The inn offers the flexibility to book multiple rooms or the entire house, making it an ideal venue for get-togethers, special events, and celebrations such as rehearsal dinners, birthday parties, service anniversaries, and honeymoons.

Annie Elizabeth in Boutique Hotel
Experience the tranquil privacy of our 12 deluxe cottage rooms, each distinctively decorated to create a charming and intimate ambiance. Relax on your own porch, patio, or deck and savor Julian’s peaceful outdoors. The Annie Elizabeth cottage room features a Queen bed and a whirlpool bathtub, adding an extra touch to your accommodations. All cottage rooms are equipped with in-room refrigerators, gas fireplaces, coffee makers, free WiFi, and complimentary breakfast to ensure a comfortable stay.

Hotel Narcissus - Room 6
Hotel Narcissus is a brand new 6-Room Boutique Hotel in the Logan Heights neighborhood of San Diego and features a Mexican Fusion Restaurant and Speakeasy Cocktail Bar called Alchemy. Logan Heights is one of the most beloved urban neighborhoods in San Diego due to its eclectic art scene and close proximity to Downtown. Hotel Narcissus is located at the base of the Coronado Bridge, less than 1-Mile Southeast of Petco Park. It is a 5-10 minute bike ride and a 20-25 minute walk to Downtown.

Hotel Marisol Coronado - Junior Suite
With just fifteen rooms, this intimate setting is a perfect couples retreat. The hotel even has a private courtyard where you can relax and surrender to the coastal breeze. Guests rave about our ideal location, tucked away on a quiet street, but walking distance to everything Coronado - beach, shops, restaurants, and entertainment. Jumpstart your getaway with a glass of complimentary champagne upon arrival. Ask our staff about local dining spots. Take a sunset stroll along the beach.

Party in Gaslamp! Chic 2br, Sleeps 6, Best Area!
Stay in the heart of all the action and excitement. You're directly above the hottest nightclubs and restaurants (which can be noisy but we do provide earplugs ;) ) in the city in San Diego’s historic Gaslamp District in this updated 2-bedroom flat designed for comfort and convenience. Ideal for up to 6 guests with a king bed, queen bed, and queen sofa bed. Enjoy fast WiFi, a 48″ Smart TV, AC, a stainless kitchen, hardwood floors, secure access, and walkable access to Gaslamp Quarter.

Old Town Hotel Room - 2 beds - Breakfast Included
We are a Hotel centrally located in Beautiful Old Town! Our space is a comfortable, clean, and centrally located gem, perfect for travelers seeking convenience and value. While our accommodations are basic, we pride ourselves on providing a spotlessly clean and cozy environment where you can unwind. What truly sets us apart is our incredible team; our staff goes above and beyond to make every guest feel right at home, ensuring your stay is as welcoming as it is memorable.

Borrego Springs Motel; New Level 2 EV Charger!
Cute 8 room motel with big pool and walking distance to restaurants. A true desert experience awaits! We have a big pool that you may have all to yourself. Our rooms have new mini split air conditioners which will keep you comfortable at any temperature. If you seek peace and quiet try us out. Swim, get a tan, read a book, relax, view the stars, marvel at the natural desert surroundings! If our room listed here is booked, call us directly as we have other rooms available.

The Surfbreak Hotel- 1 king bed
Each of our rooms is designed to be a relaxing oasis after a long day at the beach or out on the town. Each room is equipped with a TV, free Wifi, mini fridge, coffee maker, air conditioning, and desk for your convenience. Pets are allowed for an additional $75 fee. An Amenity Fee of $25 plus tax per day will be applied to all reservations. This daily fee provides access to a variety of on-site services, equipment, and added conveniences designed to enhance your stay.

Stay in Charming APT | Modern + Prime location!
Explore all of San Diego’s beautiful downtown from this gorgeously restored historic hotel. Walk to everything … Gaslamp Quarter, Petco Park, Convention Center, world-class restaurants and lounges. … King Bed, with Queen Sofa Bed … Keyless entry … 42" Samsung Smart TV - Direct TV is included … Efficiency Kitchen / Kitchenette … Air conditioning … High ceilings, ceiling fan … Fast free WIFI … Professionally cleaned & managed

Hotel Z, Z 2 Queen Suite Mobility Accessible w/Tub
You’ll get your much needed pampering experience when staying in the comfy accommodations at Hotel Z. Located in San Diego’s Gaslamp Quarter, we provide you with modern rooms full of signature amenities from our Stayppineapple Hotel brand that will ensure an exciting stay. We’ll even help you with getting around the city. An amenity fee with tax ($28.09 per day) will be charged upon arrival.
Popular amenities for San Diego County boutique hotels
Family-friendly boutique hotels

Hotel Narcissus - Room 4

Military Graduation Room - Breakfast included

Two Queen 2nd Floor Pool View - Sea Harbor Hotel

Classic King with Patio @ The Green Room Hotel

Adventures in Downtown from Stylish Modern Studio

King + Twin with Patio @ The Green Room Hotel

King + Queen with Patio @ The Green Room Hotel

Classic King with Patio @ The Green Room Hotel
Boutique hotels with a patio

Summer Room @ Eaglenest Inn w/ Pool & Seasonal SPA

Hotel Narcissus - Room 1

Autumn Room @ Eaglenest Inn w/Pool & Seasonal SPA

Hotel Narcissus - Room 2
Other boutique hotel holiday rentals

Upscale 2BR Walk to Gaslamp Hotspots | Sleeps 5!

Roomy 2BR Hotel Suite |Sleeps 5 in Central Gaslamp

The Surfbreak Hotel-2 Queen Room

Standard King Harbor View - Sea Harbor Hotel

Elevated 2BR in Gaslamp Prime Location | Sleeps 5!

Vibrant Gaslamp Suite |Convenient Central Location

Central 2BR Hotel Suite | Stay in Historic Gaslamp

Trendy Studio w/ Full Kitchen | Heart of Gaslamp
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